Variants - HGD mutation database - Leiden Open Variation Database

About this overview [Show]
This detailed view shows all details of the selected patient, including all variants reported in this patient. At the bottom of the page, all variants reported in this patient are listed, with the one you are looking at in bold. The link to the UCSC Genome Browser will show the browser zoomed in to the location of the selected variant.

Patient data (#0000319)
Patient ID	AKU_DB_146
Disease	AKU
Reference	Nemethova et al. (2016), Slovakia (Slovak Republic):Bratislava
Remarks	Homozygot
# Reported	1
Geographic origin	Slovakia
Patient/Affected_per_Family	2
Families Patients	1
Submitter	Andrea Zatkova

Variant data
Allele	Parent #2
Reported pathogenicity	Pathogenic
Concluded pathogenicity	Pathogenic
DB-ID	AKU_00004
Exon	01i
DNA change	c.16-1G>A
RNA change	r.(spl?)
Protein	p.(Tyr6_Gln29del)
Original description	ivs1-1G>A
Links	rs397515347
Variant remarks	aberrant splicing (AS)/exon skipping/in frame deletion?
Predicted Mutation Effect**	-
Reference	Muller et al. (1999)
Mutation HOT-SPOT	-
Allele code	AKU_DB_146b
Type	substitution
Re-site	(-)RsaI
Frequency	-
Template	DNA
Technique	SEQ
Location	intron

2 entries in HGD

Path.

Allele

DB-ID

Exon

DNA change

RNA change

Protein

Original description

Links

Variant remarks

Predicted Mutation Effect**

Reference

Mutation HOT-SPOT

Allele code

Type

Re-site

Frequency

Template

Technique

Location

+/+

Parent #2

AKU_00004

01i

c.16-1G>A

r.(spl?)

p.(Tyr6_Gln29del)

ivs1-1G>A

rs397515347

aberrant splicing (AS)/exon skipping/in frame deletion?

Muller et al. (1999)

AKU_DB_146b

substitution

(-)RsaI

DNA

SEQ

intron

+/+

Parent #1

AKU_00004

01i

c.16-1G>A

r.(spl?)

p.(Tyr6_Gln29del)

ivs1-1G>A

rs397515347

aberrant splicing (AS)/exon skipping/in frame deletion?

Muller et al. (1999)

AKU_DB_146a

substitution

(-)RsaI

DNA

SEQ

intron

HGD mutation database

homogentisate 1,2-dioxygenase (HGD)