Variants - HGD mutation database - Leiden Open Variation Database

About this overview [Show]
This detailed view shows all details of the selected patient, including all variants reported in this patient. At the bottom of the page, all variants reported in this patient are listed, with the one you are looking at in bold. The link to the UCSC Genome Browser will show the browser zoomed in to the location of the selected variant.

Patient data (#0000438)
Patient ID	AKU_DB_242
Disease	AKU
Reference	Ascher et al. (2019), United Kingdom (Great Britain):Liverpool
Remarks	Homozygot
# Reported	1
Geographic origin	Sri Lanka
Patient/Affected_per_Family	1
Families Patients	1
Submitter	Jeannette Usher

Variant data
Allele	Parent #1
Reported pathogenicity	Pathogenic
Concluded pathogenicity	Pathogenic
DB-ID	AKU_00202
Exon	04
DNA change	c.180G>A
RNA change	r.(?)
Protein	p.(Trp60*)
Original description	W60*
Links	-
Variant remarks	nonsense
Predicted Mutation Effect**	-
Reference	Ascher et al. (2019)
Mutation HOT-SPOT	-
Allele code	AKU_DB_242a
Type	substitution
Re-site	?
Frequency	-
Template	DNA
Technique	SEQ
Location	exon

2 entries in HGD

Path.

Allele

DB-ID

Exon

DNA change

RNA change

Protein

Original description

Links

Variant remarks

Predicted Mutation Effect**

Reference

Mutation HOT-SPOT

Allele code

Type

Re-site

Frequency

Template

Technique

Location

+/+

Parent #2

AKU_00202

c.180G>A

r.(?)

p.(Trp60*)

W60*

nonsense

Ascher et al. (2019)

AKU_DB_242b

substitution

DNA

SEQ

exon

+/+

Parent #1

AKU_00202

c.180G>A

r.(?)

p.(Trp60*)

W60*

nonsense

Ascher et al. (2019)

AKU_DB_242a

substitution

DNA

SEQ

exon

HGD mutation database

homogentisate 1,2-dioxygenase (HGD)