LOVD - Variant listings for HGD

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Exon Hide Exon column Descending
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RNA change Hide RNA change column Descending
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Original description Hide Original description column Descending
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Links Hide Links column Descending
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Variant remarks Hide Variant remarks column Descending
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Predicted Mutation Effect** Hide Predicted Mutation Effect** column Descending
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Reference Hide Reference column Descending
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Mutation HOT-SPOT Hide Mutation HOT-SPOT column Descending
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Allele code Hide Allele code column Descending
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Type Hide Type column Descending
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Re-site Hide Re-site column Descending
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Frequency Hide Frequency column Descending
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Template Hide Template column Descending
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Technique Hide Technique column Descending
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Disease Hide Disease column Descending
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Remarks Hide Remarks column Descending
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# Reported Hide # Reported column Descending
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Families Patients Hide Families Patients column Descending
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+/+? AKU_00079 11 c.808G>A
    + c.1102A>G
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_109a substitution (+)EcoNI - DNA SEQ exon AKU_DB_109 AKU Zatkova et al. (2012), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 France/Armenia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_29a substitution (+)EcoNI - DNA SEQ exon AKU_DB_29 AKU Porfirio et al. (2000), Italy:Florence Homozygot 1 Italy 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_29b substitution (+)EcoNI - DNA SEQ exon AKU_DB_29 AKU Porfirio et al. (2000), Italy:Florence Homozygot 1 Italy 1 1
+/+? AKU_00079 11 c.808G>A
    + c.1111dupC
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_52a substitution (+)EcoNI - DNA SEQ exon AKU_DB_52 AKU Zatkova et al. (2000b), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.1111dupC
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_53a substitution (+)EcoNI - DNA SEQ exon AKU_DB_53 AKU Zatkova et al. (2000b), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 7 1
+/+? AKU_00079 11 c.808G>A
    + c.481G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_59b substitution (+)EcoNI - DNA SEQ exon AKU_DB_59 AKU Zatkova et al. (2000b), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.457dupG
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_61c substitution (+)EcoNI - DNA SEQ exon AKU_DB_61 AKU Zatkova et al. (2000b), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 2 1
+/+? AKU_00079 11 c.808G>A
    + c.175delA
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_66b substitution (+)EcoNI - DNA SEQ exon AKU_DB_66 AKU Zatkova et al. (2000b), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.481G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_67b substitution (+)EcoNI - DNA SEQ exon AKU_DB_67 AKU Zatkova et al. (2000b), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 2 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_77a substitution (+)EcoNI - DNA SEQ exon AKU_DB_77 AKU Goicoechea de Jorge et al. (2002), Slovakia (Slovak Republic):Bratislava Homozygot 1 Dominican republic 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_77b substitution (+)EcoNI - DNA SEQ exon AKU_DB_77 AKU Goicoechea de Jorge et al. (2002), Slovakia (Slovak Republic):Bratislava Homozygot 1 Dominican republic 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_91a substitution (+)EcoNI - DNA SEQ exon AKU_DB_91 AKU Uyguner et al. (2003), Slovakia (Slovak Republic):Bratislava Homozygot 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_91b substitution (+)EcoNI - DNA SEQ exon AKU_DB_91 AKU Uyguner et al. (2003), Slovakia (Slovak Republic):Bratislava Homozygot 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.1111dupC
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_SRS_4a substitution (+)EcoNI - DNA SEQ exon AKU_SRS_4 AKU Srsen et al. (2002), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_VIL_10a substitution (+)EcoNI - DNA SEQ exon AKU_VIL_10 AKU Vilboux et al. (2009), Slovakia (Slovak Republic):Bratislava Homozygot 1 USA 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_VIL_10b substitution (+)EcoNI - DNA SEQ exon AKU_VIL_10 AKU Vilboux et al. (2009), Slovakia (Slovak Republic):Bratislava Homozygot 1 USA 1 1
+/+? AKU_00079 11 c.808G>A
    + c.481G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_115b substitution (+)EcoNI - DNA SEQ exon AKU_DB_115 AKU Zatkova et al. (2012), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.1120G>C
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_125a substitution (+)EcoNI - DNA SEQ exon AKU_DB_125 AKU Zatkova et al. (2012), United Kingdom (Great Britain):Liverpool Compound heterozygous 1 United Kingdom 1 1
+/+? AKU_00079 11 c.808G>A
    + c.1111dupC
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_67b substitution (+)EcoNI - DNA SEQ exon AKU_DB_67 AKU Zatkova et al. (2012), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 2 1
+/+? AKU_00079 11 c.808G>A
    + c.557T>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_148a substitution (+)EcoNI - DNA SEQ exon AKU_DB_148 AKU Nemethova et al. (2016), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Brasil 1 1
+/+? AKU_00079 11 c.808G>A
    + c.481G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_150b substitution (+)EcoNI - DNA SEQ exon AKU_DB_150 AKU Nemethova et al. (2016), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.457dupG
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_237a substitution (+)EcoNI - DNA SEQ exon AKU_DB_237 AKU Ascher et al. (2019), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.1-8460_282+6727del
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TR3_0122a substitution (+)EcoNI - DNA SEQ exon AKU_TR3_0122 AKU Ascher et al. (2019), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Germany/Peru 1 1
+/+? AKU_00079 11 c.808G>A
    + c.688C>T
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TR2_0322b substitution (+)EcoNI - DNA SEQ exon AKU_TR2_0322 AKU Ascher et al. (2019), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 France/Italy 2 1
+/+? AKU_00079 11 c.808G>A
    + c.481G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TR2_0209b substitution (+)EcoNI - DNA SEQ exon AKU_TR2_0209 AKU Ascher et al. (2019), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Slovakia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.174A>T
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_307a substitution (+)EcoNI - DNA SEQ exon AKU_DB_307 AKU Soltysova et al. (2021), Russia:Moscow Compound heterozygous 1 Russia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_343a substitution (+)EcoNI - DNA SEQ exon AKU_DB_343 AKU Kilavuz et al. 2018, Turkey:Adana Homozygot 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_343b substitution (+)EcoNI - DNA SEQ exon AKU_DB_343 AKU Kilavuz et al. 2018, Turkey:Adana Homozygot 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.175delA
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TU_07c substitution (+)EcoNI - DNA SEQ exon AKU_TU_07 AKU Kisa et al. (2021), Turkey:Izmir Compound heterozygous 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.175delA
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TU_11b substitution (+)EcoNI - DNA SEQ exon AKU_TU_11 AKU Kisa et al. (2021), Turkey:Izmir Compound heterozygous 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TU_12a substitution (+)EcoNI - DNA SEQ exon AKU_TU_12 AKU Kisa et al. (2021), Turkey:Izmir Homozygot 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TU_12b substitution (+)EcoNI - DNA SEQ exon AKU_TU_12 AKU Kisa et al. (2021), Turkey:Izmir Homozygot 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.334T>G
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TU_29b substitution (+)EcoNI - DNA SEQ exon AKU_TU_29 AKU Kisa et al. (2021), Turkey:Izmir Compound heterozygous 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.347T>C
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_392b substitution (+)EcoNI - DNA SEQ exon AKU_DB_392 AKU Danda et al. (2020), India:Vellore Compound heterozygous 1 India 1 1
+/+? AKU_00079 11 c.808G>A
    + c.469G>T
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_405b substitution (+)EcoNI - DNA SEQ exon AKU_DB_405 AKU Danda et al. (2020), India:Vellore Compound heterozygous 1 India 1 1
+/+? AKU_00079 11 c.808G>A
    + c.175delA
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_432b substitution (+)EcoNI - DNA SEQ exon AKU_DB_432 AKU submitted, Dr. Pelin Teke Kisa, Turkey:Izmir Compound heterozygous 1 Turkey 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_437a substitution (+)EcoNI - DNA SEQ exon AKU_DB_437 AKU submitted, Dr. Andrea Zatkova, Slovakia (Slovak Republic):Bratislava Homozygot 1 Italy 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_437b substitution (+)EcoNI - DNA SEQ exon AKU_DB_437 AKU submitted, Dr. Andrea Zatkova, Slovakia (Slovak Republic):Bratislava Homozygot 1 Italy 1 1
+/+? AKU_00079 11 c.808G>A
    + c.1078G>C
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TR3_0126a substitution (+)EcoNI - DNA SEQ exon AKU_TR3_0126 AKU Ascher et al. (2019), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Latvia 1 1
+/+? AKU_00079 11 c.808G>A
    + c.588delC
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_TR3_0127a substitution (+)EcoNI - DNA SEQ exon AKU_TR3_0127 AKU Ascher et al. (2019), Slovakia (Slovak Republic):Bratislava Compound heterozygous 1 Portugal 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_441a substitution (+)EcoNI - DNA SEQ exon AKU_DB_441 AKU Abdelkhalek et al. (2023), Slovakia (Slovak Republic):Bratislava Homozygot 1 Egypt 1 1
+/+? AKU_00079 11 c.808G>A
    + c.808G>A
r.(?) p.(Gly270Arg) G270R rs120074174 missense Protomer destabilisation, Hexamer disruption Muller et al. (1999) CCC triplet, CpG AKU_DB_441b substitution (+)EcoNI - DNA SEQ exon AKU_DB_441 AKU Abdelkhalek et al. (2023), Slovakia (Slovak Republic):Bratislava Homozygot 1 Egypt 1 1
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Coding DNA Reference Sequence: NM_000187.3, the first base of the Met-codon is counted as position 1.

Some specific features:
Exon: (00) stands for any exon; (i) indicates intron.
DNA: (c.?) or wobble code is used when nucleotide change was not known or not indicated
Variant original description: brief name of the mutation; if original description of the mutation was different, it is indicated after comma
Remarks: description of the variant, AS= acceptor site, DS=donor site
Predicted Mutation Effect**: The effects of the novel missense variants on stability and protein-protein afinity was assessed in the context
of the molecular interactions of the wild-type residue using mCSM Pires et al. (2014a) and DUET Pires et al. (2014b). Details are downloadable here: TABLE

Allele_code: i.e. patient with the Patient_ID (AKU_AQR_11) has alleles AKU_AQR_11a and AKU_AQR_11b
Restriction site: mutation abolishes (-) or creates (+) specific restriction site
Frequency: of specific polymorphic alleles (AKUdatabase or Vilboux at al. (2009))
Patient_ID: in cases with ID starting with AKU_DB_ we report also HGD haplotypes that can be found in this link: HGD haplotypes associated with AKU mutations
DBID: AKU_00000 is used for alleles with unknown mutation

References not present in PubMed:
Aquaron et al. (2009) (not listed in PubMed): Current Rheumatology Reviews, 2009, 5:111-125. https://doi.org/10.2174/157339709788298419
Cho end Kim (2018) (not listed in PubMed): J Genet Med, 2018, 15:17-19. https://doi.org/10.5734/JGM.2018.15.1.17
Kilavuz et al. (2018) (not listed in PubMed): J. Pediatr. Res. 2018, 5: 7-11. https://doi.org/10.4274/jpr.20982
Akbaba et al. (2020) (not listed in PubMed): JPEM, 33 (2): 289-294, https://doi.org/10.1515/jpem-2019-0163
Mwafi et al. (2021) (not listed in PubMed): AIMS Molecular Science, 8 (1): 60-75, https://doi.org/10.3934/molsci.2021005
Noorian et al. (2018) (not listed in PubMed): Meta Gene, 18: 174-176, https://doi.org/10.1016/j.mgene.2018.09.006

Legend: [ HGD full legend ]
Sequence variations are described basically as recommended by the Ad-Hoc Committee for Mutation Nomenclature (AHCMN), with the recently suggested additions (den Dunnen JT and Antonarakis SE [2000], Hum.Mut. 15:7-12); for a summary see Nomenclature. Coding DNA Reference Sequence, with the first base of the Met-codon counted as position 1.
Path.: Variant pathogenicity, in the format Reported/Concluded; '+' indicating the variant is pathogenic, '+?' probably pathogenic, '-' no known pathogenicity, '-?' probably no pathogenicity, '?' effect unknown. HGD DB-ID: Database IDentifier; When available, links to OMIM ID's are provided. Exon: Exon numbering. DNA change: Variation at DNA-level. If present, "Full Details" will show you the the full-length entry. RNA change: Variation at RNA-level, (?) unknown but probably identical to DNA. Protein: Variation at protein level. Original description: Variant_original_description Links: Links Variant remarks: Variant remarks Predicted Mutation Effect**: The effects of the novel missense variants on stability and protein-protein afinity was assessed in the context of the molecular interactions of the wild-type residue using mCSM and DUET. Reference: Reference describing the variation, "Submitted:" indicating that the mutation was submitted directly to this database. Mutation HOT-SPOT: mutation_HOT_SPOT Allele code: Allele_code Type: Type of variant at DNA level. Re-site: Variant creates (+) or destroys (-) a restriction enzyme recognition site. Frequency: Frequency if variant is non pathogenic. Template: Variant detected in DNA, RNA and/or Protein. Technique: Technique used to detect the variation. Location: Variant location at DNA level. Patient ID: Internal reference to the patient. Disease: Disease phenotype, as reported in paper/by submitter, unless modified by the curator. Reference: Reference describing the patient, "Submitted:" indicating that the mutation was submitted directly to this database. # Reported: Number of times this case has been reported Geographic origin: Geographic origin of patient Patient/Affected_per_Family: Number of patients per family Families Patients: test